PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G058900.1
Common NameB456_005G058900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 1178aa    MW: 131201 Da    PI: 9.0741
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G058900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.83.9e-114782340
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                         WT+eE e++++a +++G++ Wk++a ++  +R+ +++
  Gorai.005G058900.1 47 QWTKEELERFYEAYRKYGKD-WKKVATMIR-NRSVEMV 82
                        6*****************99.*********.**98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.6264396IPR017884SANT domain
SuperFamilySSF466893.96E-114491IPR009057Homeodomain-like
SMARTSM007173.6E-64492IPR001005SANT/Myb domain
PfamPF002491.2E-94782IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-54781IPR009057Homeodomain-like
CDDcd001671.25E-74882No hitNo description
SMARTSM011356.0E-56636737IPR033471DIRP domain
PfamPF065847.1E-33636736IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1178 aa     Download sequence    Send to blast
MAPSRKSKSV NKKFSYVNEV ASIKDGDSSA KRSGKRKRKL SDMLGPQWTK EELERFYEAY  60
RKYGKDWKKV ATMIRNRSVE MVEALYTMNR AYLSLPEGTA SVVGLIAMMT DHYSVMGGSD  120
SEQESNEGMG ISRKPQKRSR GKIRDQPSKS SDKPLPDLLQ FPSANSGCLS LLKRRRSESR  180
PRAVGKRTPR VPISFSHDKN KGERYFSPIR QGMKLKVDAV DDDVAHEVAL ALTEASQRGG  240
SPQVSRTPNR KAETPSPVIN SERMNADSET TSAKIHGSEV DEDACELSLG STEADNADYA  300
KDKNYSRNIE GTGTVEVQQK GKRYYRRKPE IEESVNHQED TKEACSGTEE GQQLCDFKGN  360
FDCEVEDAKT SRASIKGPRK RSKKVLFEGV EDTAFDALQT LADLSLMMPE TADTESSVQH  420
KEEKNEVEKT KLKGNHLVPG AKGCASKASR HGKLFGHDVR ANPEAKEAHP ANVGMRKRRQ  480
KSSPYKLQIP KDETDADSQL GESPNIEASG EVKNLLSKGK LSNNVGHPKQ GKFVRPPEHA  540
SSSTDQGRDL NNLAPSTIQV SSVNQVNLPT KIRSKRKTDV REPAIRKGIK SSDNIVKGKI  600
SGPVTLFHDG ALDLKEKLCN FLCSYRARRW CAFEWFYSTI DYPWFAKREF VEYLDHVGLG  660
HIPRLTRVEW GVIRSSLGKP RRFSEQFLKE EREKLNQYRE SVRRHYAELR AGIGEGLPTD  720
LARPLSVGQR VIAVHPKIRE IHDGSVLTVD YSRYRIQFDS PELGVEFVMD VDCMPLNPME  780
NLPASLSRQN AAIRKFVENY NELKMNGQSK ESKMEENIKF MQCDNLENAN SPSRTSPSTF  840
SVGNLSQPVK VDSSSPNLQL KIGPTETVYT QAINSQPSAV SLVQAREADV EALSQLTRAL  900
DKKHLQEAIV SELRRMNDEV LENQKGGDNH IKDSDSFKKQ YAAVLLQLNE VNEQVSSALL  960
CLRQRNTYQG TSSGKLLNPS GKIGEQGSQL SSFDAMHHVQ ESVSHVAEIV ESSRRKARSM  1020
VDAALKAMSS LRKGGKNIER IEDAIDFVNN QLSLNEFSAP APRSAAPVDS VRSHDNLTAC  1080
SSYPFATSHI PEMKLQNLSD QDELKIPSDL ISQCVATLLM IQKCTERQFP PGDVAEVLDS  1140
AVTSLKPCCS QNLPIYTEIQ KCMGIIRNQI LALVPTS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1474479MRKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482094.10.0PREDICTED: protein ALWAYS EARLY 3 isoform X1
SwissprotQ6A3320.0ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLA0A0D2SBK30.0A0A0D2SBK3_G
STRINGPOPTR_0008s22660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM127142427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]